Detailed information of SNP:
|
SNP ID:
sf1216016830(Gbrowse)
Chromosome: chr12 Position: 16016830 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 95.42% | 4.58% |
| All Indica | 786 | 96.18% | 3.82% |
| All Japonica | 470 | 92.98% | 7.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 70 | 62.86% | 37.14% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216016830 | T->C | INTERGENIC | None |