Detailed information of SNP:
|
SNP ID:
sf1216017123(Gbrowse)
Chromosome: chr12 Position: 16017123 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 59.09% | 40.91% |
| All Indica | 797 | 43.79% | 56.21% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 210 | 48.57% | 51.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216017123 | A->G | INTERGENIC | None |