Detailed information of SNP:
|
SNP ID:
sf1216017649(Gbrowse)
Chromosome: chr12 Position: 16017649 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.52% | 40.48% |
| All Indica | 797 | 44.42% | 55.58% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 374 | 24.33% | 75.67% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216017649 | G->A | INTERGENIC | None |