Detailed information of SNP:
|
SNP ID:
sf1216018183(Gbrowse)
Chromosome: chr12 Position: 16018183 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.58% | 38.42% |
| All Indica | 796 | 47.49% | 52.51% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216018183 | C->T | INTERGENIC | None |