Detailed information of SNP:
|
SNP ID:
sf1216021272(Gbrowse)
Chromosome: chr12 Position: 16021272 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 93.62% | 6.38% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 476 | 83.19% | 16.81% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 317 | 83.91% | 16.09% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216021272 | G->A | INTERGENIC | None |