Detailed information of SNP:
|
SNP ID:
sf1216031409(Gbrowse)
Chromosome: chr12 Position: 16031409 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 66.67% | 33.33% |
| All Indica | 736 | 47.42% | 52.58% |
| All Japonica | 480 | 96.67% | 3.33% |
| Aus | 63 | 55.56% | 44.44% |
| Indica I | 345 | 51.01% | 48.99% |
| Indica II | 199 | 39.20% | 60.80% |
| Indica Intermediate | 192 | 49.48% | 50.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 81 | 87.65% | 12.35% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216031409 | C->T | INTERGENIC | None |