Detailed information of SNP:
|
SNP ID:
sf1216031693(Gbrowse)
Chromosome: chr12 Position: 16031693 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 66.05% | 33.95% |
| All Indica | 794 | 94.46% | 5.54% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216031693 | C->A | INTERGENIC | None |