Detailed information of SNP:
|
SNP ID:
sf1216032283(Gbrowse)
Chromosome: chr12 Position: 16032283 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 59.91% | 40.09% |
| All Indica | 769 | 44.60% | 55.40% |
| All Japonica | 480 | 82.92% | 17.08% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 359 | 34.26% | 65.74% |
| Indica II | 205 | 58.05% | 41.95% |
| Indica Intermediate | 205 | 49.27% | 50.73% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 77 | 19.48% | 80.52% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216032283 | T->G | INTERGENIC | None |