Detailed information of SNP:
|
SNP ID:
sf1216034900(Gbrowse)
Chromosome: chr12 Position: 16034900 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 52.89% | 47.11% |
| All Indica | 735 | 34.01% | 65.99% |
| All Japonica | 494 | 81.78% | 18.22% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 337 | 30.56% | 69.44% |
| Indica II | 204 | 31.86% | 68.14% |
| Indica Intermediate | 194 | 42.27% | 57.73% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216034900 | C->T | INTERGENIC | None |