Detailed information of SNP:
|
SNP ID:
sf1216036298(Gbrowse)
Chromosome: chr12 Position: 16036298 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 59.00% | 41.00% |
| All Indica | 788 | 82.74% | 17.26% |
| All Japonica | 495 | 21.01% | 78.99% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 368 | 86.68% | 13.32% |
| Indica II | 210 | 81.43% | 18.57% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216036298 | A->T | INTERGENIC | None |