Detailed information of SNP:
|
SNP ID:
sf1216052234(Gbrowse)
Chromosome: chr12 Position: 16052234 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.85% | 46.15% |
| All Indica | 797 | 72.15% | 27.85% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 78.07% | 21.93% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216052234 | C->T | INTERGENIC | None |