Detailed information of SNP:
|
SNP ID:
sf1216055547(Gbrowse)
Chromosome: chr12 Position: 16055547 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.23% | 12.77% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 496 | 84.07% | 15.93% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216055547 | G->T | INTERGENIC | None |