Detailed information of SNP:
|
SNP ID:
sf1216055701(Gbrowse)
Chromosome: chr12 Position: 16055701 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.77% | 11.23% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216055701 | A->T | INTERGENIC | None |