Detailed information of SNP:
|
SNP ID:
sf1216056828(Gbrowse)
Chromosome: chr12 Position: 16056828 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.09% | 6.91% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216056828 | T->C | INTERGENIC | None |