Detailed information of SNP:
|
SNP ID:
sf1216057197(Gbrowse)
Chromosome: chr12 Position: 16057197 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 89.07% | 10.93% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216057197 | T->C | INTERGENIC | None |