Detailed information of SNP:
|
SNP ID:
sf1216060159(Gbrowse)
Chromosome: chr12 Position: 16060159 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 93.06% | 6.94% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216060159 | C->T | INTERGENIC | None |