Detailed information of SNP:
|
SNP ID:
sf1216061144(Gbrowse)
Chromosome: chr12 Position: 16061144 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 53.68% | 46.32% |
| All Indica | 771 | 33.46% | 66.54% |
| All Japonica | 494 | 82.79% | 17.21% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 357 | 37.25% | 62.75% |
| Indica II | 208 | 27.88% | 72.12% |
| Indica Intermediate | 206 | 32.52% | 67.48% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216061144 | G->A | INTERGENIC | None |