Detailed information of SNP:
|
SNP ID:
sf1216070285(Gbrowse)
Chromosome: chr12 Position: 16070285 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 80.30% | 19.70% |
| All Indica | 745 | 73.69% | 26.31% |
| All Japonica | 475 | 91.37% | 8.63% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 345 | 68.12% | 31.88% |
| Indica II | 198 | 88.38% | 11.62% |
| Indica Intermediate | 202 | 68.81% | 31.19% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 75 | 58.67% | 41.33% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216070285 | C->T | INTERGENIC | None |