Detailed information of SNP:
|
SNP ID:
sf1216073198(Gbrowse)
Chromosome: chr12 Position: 16073198 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.48% | 4.52% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216073198 | C->T | LOC_Os12g27340(LOC_Os12g27340.1) | Non-Synonymous SNP |