Detailed information of SNP:
|
SNP ID:
sf1216079277(Gbrowse)
Chromosome: chr12 Position: 16079277 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 67.50% | 32.50% |
| All Indica | 784 | 91.20% | 8.80% |
| All Japonica | 493 | 26.57% | 73.43% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 367 | 93.19% | 6.81% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 206 | 87.38% | 12.62% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216079277 | A->C | LOC_Os12g27350(LOC_Os12g27350.1) | Non-Synonymous SNP |