Detailed information of SNP:
|
SNP ID:
sf1216079476(Gbrowse)
Chromosome: chr12 Position: 16079476 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 60.33% | 39.67% |
| All Indica | 785 | 40.89% | 59.11% |
| All Japonica | 496 | 90.12% | 9.88% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 366 | 39.89% | 60.11% |
| Indica II | 210 | 42.86% | 57.14% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216079476 | G->C | INTERGENIC | None |