Detailed information of SNP:
|
SNP ID:
sf1216081806(Gbrowse)
Chromosome: chr12 Position: 16081806 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 51.98% | 48.02% |
| All Indica | 793 | 29.89% | 70.11% |
| All Japonica | 496 | 83.27% | 16.73% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 30.03% | 69.97% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 208 | 34.13% | 65.87% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216081806 | G->T | INTERGENIC | None |