Detailed information of SNP:
|
SNP ID:
sf1216082436(Gbrowse)
Chromosome: chr12 Position: 16082436 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 56.62% | 43.38% |
| All Indica | 795 | 38.11% | 61.89% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 372 | 40.86% | 59.14% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216082436 | T->C | INTERGENIC | None |