Detailed information of SNP:
|
SNP ID:
sf1216085041(Gbrowse)
Chromosome: chr12 Position: 16085041 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 85.78% | 14.22% |
| All Indica | 770 | 79.09% | 20.91% |
| All Japonica | 493 | 93.31% | 6.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 75.62% | 24.38% |
| Indica II | 202 | 87.13% | 12.87% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216085041 | A->T | INTERGENIC | None |