Detailed information of SNP:
|
SNP ID:
sf1216103499(Gbrowse)
Chromosome: chr12 Position: 16103499 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 50.37% | 49.63% |
| All Indica | 761 | 77.53% | 22.47% |
| All Japonica | 481 | 6.86% | 93.14% |
| Aus | 61 | 63.93% | 36.07% |
| Indica I | 352 | 72.73% | 27.27% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 199 | 71.36% | 28.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 82 | 35.37% | 64.63% |
| Japonica Intermediate | 64 | 4.69% | 95.31% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216103499 | A->C | LOC_Os12g27390(LOC_Os12g27390.1) | INTRON |