Detailed information of SNP:
|
SNP ID:
sf1216107807(Gbrowse)
Chromosome: chr12 Position: 16107807 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 56.98% | 43.02% |
| All Indica | 782 | 34.91% | 65.09% |
| All Japonica | 494 | 94.33% | 5.67% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 364 | 50.00% | 50.00% |
| Indica II | 211 | 9.00% | 91.00% |
| Indica Intermediate | 207 | 34.78% | 65.22% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216107807 | T->C | LOC_Os12g27390(LOC_Os12g27390.1) | INTRON |