Detailed information of SNP:
|
SNP ID:
sf1216108003(Gbrowse)
Chromosome: chr12 Position: 16108003 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 63.34% | 36.66% |
| All Indica | 747 | 40.70% | 59.30% |
| All Japonica | 493 | 96.75% | 3.25% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 335 | 60.30% | 39.70% |
| Indica II | 210 | 10.00% | 90.00% |
| Indica Intermediate | 202 | 40.10% | 59.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216108003 | A->G | LOC_Os12g27390(LOC_Os12g27390.1) | INTRON |