Detailed information of SNP:
|
SNP ID:
sf1216113710(Gbrowse)
Chromosome: chr12 Position: 16113710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 80.30% | 19.70% |
| All Indica | 780 | 68.97% | 31.03% |
| All Japonica | 493 | 96.75% | 3.25% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 363 | 64.19% | 35.81% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 207 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216113710 | T->C | INTERGENIC | None |