Detailed information of SNP:
|
SNP ID:
sf1216115650(Gbrowse)
Chromosome: chr12 Position: 16115650 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 75.85% | 24.15% |
| All Indica | 745 | 63.09% | 36.91% |
| All Japonica | 490 | 93.88% | 6.12% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 349 | 62.18% | 37.82% |
| Indica II | 203 | 67.49% | 32.51% |
| Indica Intermediate | 193 | 60.10% | 39.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 73.86% | 26.14% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216115650 | T->C | INTERGENIC | None |