Detailed information of SNP:
|
SNP ID:
sf1216121465(Gbrowse)
Chromosome: chr12 Position: 16121465 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 50.71% | 49.29% |
| All Indica | 794 | 28.46% | 71.54% |
| All Japonica | 495 | 86.67% | 13.33% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 371 | 29.38% | 70.62% |
| Indica II | 212 | 24.53% | 75.47% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216121465 | C->A | INTERGENIC | None |