Detailed information of SNP:
|
SNP ID:
sf1216129658(Gbrowse)
Chromosome: chr12 Position: 16129658 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.59% | 37.41% |
| All Indica | 794 | 89.67% | 10.33% |
| All Japonica | 497 | 19.32% | 80.68% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 89.54% | 10.46% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216129658 | G->C | INTERGENIC | None |