Detailed information of SNP:
|
SNP ID:
sf1216130166(Gbrowse)
Chromosome: chr12 Position: 16130166 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.84% | 36.16% |
| All Indica | 795 | 91.57% | 8.43% |
| All Japonica | 496 | 19.76% | 80.24% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216130166 | T->C | INTERGENIC | None |