Detailed information of SNP:
|
SNP ID:
sf1216130170(Gbrowse)
Chromosome: chr12 Position: 16130170 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 50.26% | 49.74% |
| All Indica | 753 | 72.91% | 27.09% |
| All Japonica | 466 | 14.59% | 85.41% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 353 | 70.54% | 29.46% |
| Indica II | 202 | 77.72% | 22.28% |
| Indica Intermediate | 198 | 72.22% | 27.78% |
| Temperate Japonica | 313 | 0.32% | 99.68% |
| Tropical Japonica | 88 | 63.64% | 36.36% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216130170 | G->T | INTERGENIC | None |