Detailed information of SNP:
|
SNP ID:
sf1216133503(Gbrowse)
Chromosome: chr12 Position: 16133503 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 93.92% | 6.08% |
| All Indica | 766 | 90.73% | 9.27% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 360 | 90.28% | 9.72% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 198 | 85.86% | 14.14% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216133503 | G->A | LOC_Os12g27410(LOC_Os12g27410.1) | INTRON |