Detailed information of SNP:
|
SNP ID:
sf1216135855(Gbrowse)
Chromosome: chr12 Position: 16135855 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 94.11% | 5.89% |
| All Indica | 787 | 93.01% | 6.99% |
| All Japonica | 484 | 95.25% | 4.75% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 92.10% | 7.90% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 327 | 94.80% | 5.20% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216135855 | C->T | INTERGENIC | None |