Detailed information of SNP:
|
SNP ID:
sf1216138555(Gbrowse)
Chromosome: chr12 Position: 16138555 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.94% | 36.06% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216138555 | G->A | LOC_Os12g27420(LOC_Os12g27420.1) | Synonymous |