Detailed information of SNP:
|
SNP ID:
sf1216149051(Gbrowse)
Chromosome: chr12 Position: 16149051 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 80.67% | 19.33% |
| All Indica | 787 | 71.92% | 28.08% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 69.57% | 30.43% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 206 | 64.56% | 35.44% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216149051 | C->T | INTERGENIC | None |