Detailed information of SNP:
|
SNP ID:
sf1216149190(Gbrowse)
Chromosome: chr12 Position: 16149190 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 89.56% | 10.44% |
| All Indica | 789 | 87.20% | 12.80% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 86.79% | 13.21% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 205 | 81.95% | 18.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216149190 | T->C | INTERGENIC | None |