Detailed information of SNP:
|
SNP ID:
sf1216150921(Gbrowse)
Chromosome: chr12 Position: 16150921 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.75% | 10.25% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 494 | 91.50% | 8.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216150921 | G->A | INTERGENIC | None |