Detailed information of SNP:
|
SNP ID:
sf1216153761(Gbrowse)
Chromosome: chr12 Position: 16153761 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.94% | 34.06% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 497 | 17.30% | 82.70% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216153761 | C->G | LOC_Os12g27460(LOC_Os12g27460.1) | INTRON |