Detailed information of SNP:
|
SNP ID:
sf1216153872(Gbrowse)
Chromosome: chr12 Position: 16153872 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 85.39% | 14.61% |
| All Indica | 794 | 80.73% | 19.27% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 30 | 93.33% | 6.67% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216153872 | A->G | LOC_Os12g27460(LOC_Os12g27460.1) | INTRON |