Detailed information of SNP:
|
SNP ID:
sf1216154465(Gbrowse)
Chromosome: chr12 Position: 16154465 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.31% | 31.69% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216154465 | G->A | LOC_Os12g27460(LOC_Os12g27460.1) | INTRON |