Detailed information of SNP:
SNP ID:
sf1216155855(Gbrowse)
Chromosome: chr12 Position: 16155855 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 96.97% | 3.03% |
All Indica | 799 | 98.25% | 1.75% |
All Japonica | 497 | 94.57% | 5.43% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 94.84% | 5.16% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 72.34% | 27.66% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1216155855 | T->C | INTERGENIC | None |