Detailed information of SNP:
|
SNP ID:
sf1216162353(Gbrowse)
Chromosome: chr12 Position: 16162353 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 65.41% | 34.59% |
| All Indica | 792 | 44.82% | 55.18% |
| All Japonica | 490 | 92.04% | 7.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 15.28% | 84.72% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 209 | 52.63% | 47.37% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 87 | 67.82% | 32.18% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216162353 | T->G | INTERGENIC | None |