Detailed information of SNP:
|
SNP ID:
sf1216163118(Gbrowse)
Chromosome: chr12 Position: 16163118 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 78.74% | 21.26% |
| All Indica | 775 | 73.03% | 26.97% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 360 | 91.39% | 8.61% |
| Indica II | 208 | 33.17% | 66.83% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216163118 | T->C | INTERGENIC | None |