Detailed information of SNP:
|
SNP ID:
sf1216165898(Gbrowse)
Chromosome: chr12 Position: 16165898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 67.04% | 32.96% |
| All Indica | 795 | 47.55% | 52.45% |
| All Japonica | 495 | 92.93% | 7.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 22.67% | 77.33% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 209 | 53.59% | 46.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216165898 | G->A | LOC_Os12g27470(LOC_Os12g27470.1) | UTR_3_PRIME |