Detailed information of SNP:
|
SNP ID:
sf1216173321(Gbrowse)
Chromosome: chr12 Position: 16173321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 91.04% | 8.96% |
| All Indica | 775 | 86.58% | 13.42% |
| All Japonica | 486 | 95.88% | 4.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 197 | 62.94% | 37.06% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 82.76% | 17.24% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216173321 | C->T | INTERGENIC | None |