Detailed information of SNP:
|
SNP ID:
sf1216173407(Gbrowse)
Chromosome: chr12 Position: 16173407 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 68.09% | 31.91% |
| All Indica | 787 | 97.20% | 2.80% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216173407 | T->C | INTERGENIC | None |