Detailed information of SNP:
|
SNP ID:
sf1216182119(Gbrowse)
Chromosome: chr12 Position: 16182119 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 96.32% | 3.68% |
| All Indica | 772 | 94.56% | 5.44% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 357 | 94.40% | 5.60% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216182119 | C->T | LOC_Os12g27490(LOC_Os12g27490.1) | Non-Synonymous SNP |