Detailed information of SNP:
|
SNP ID:
sf1216189298(Gbrowse)
Chromosome: chr12 Position: 16189298 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 65.12% | 34.88% |
| All Indica | 789 | 93.41% | 6.59% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216189298 | G->C | LOC_Os12g27510(LOC_Os12g27510.1) | Non-Synonymous SNP |